Mulgara

/usr/lib/jvm/java-6-sun/bin/java Xrunjdwp:transport=dt_socket,address=127.0.0.1:36260,suspend=y,server=n -Dambra.topaz.tripleStore.mulgara.baseuri=local:///topazproject -Dambra.topaz.blobStore.beanName=simpleBlobStore -Dambra.topaz.tripleStore.mulgara.dbDir=/home/boconnor/Topaz/var/ambra/mulgara_db -Dambra.topaz.blobStore.simple.directory=/home/boconnor/Topaz/var/ambra/blob-store -Dclassworlds.conf=/home/boconnor/bin/maven/bin/m2.conf -Dmaven.home=/home/boconnor/bin/maven -Dfile.encoding=UTF-8 -classpath /home/boconnor/bin/maven/boot/classworlds-1.1.jar:/home/boconnor/bin/idea-9732/lib/idea_rt.jar org.codehaus.classworlds.Launcher --no-plugin-registry --fail-fast --no-plugin-updates --strict-checksums -f /home/boconnor/Topaz/head/ambra/webapp/pom.xml jetty:run -Djavax.net.ssl.trustStore=/etc/topaz/keystore.localhost.jks -Djavax.net.ssl.trustStorePassword=changeit
Connected to the target VM, address: '127.0.0.1:36260', transport: 'socket'
+ Enabling strict checksum verification on all artifact downloads.
[INFO] Scanning for projects...
[INFO] Searching repository for plugin with prefix: 'jetty'.
[INFO] -----------------------------------------------------------------------
[INFO] Building Ambra Web Application
[INFO] task-segment: [jetty:run]
[INFO] ------------------------------------------------------------------------
[INFO] Preparing jetty:run
[INFO] [dependency:unpack {execution: unpack dojo js and css}]
[INFO] Configured Artifact: org.topazproject:ambra-js:js:0.9.3-SNAPSHOT:zip
[INFO] ambra-js-0.9.3-SNAPSHOT-js.zip already unpacked.
[INFO] [resources:resources]
[INFO] Using default encoding to copy filtered resources.
[INFO] [compiler:compile]
[INFO] Compiling 1 source file to /home/boconnor/Topaz/head/ambra/webapp/target/classes
[INFO] [resources:testResources]
[INFO] Using default encoding to copy filtered resources.
[INFO] [compiler:testCompile]
[INFO] Nothing to compile - all classes are up to date
2009-04-27 14:51:10.821::INFO: Logging to STDERR via org.mortbay.log.StdErrLog
[INFO] [jetty:run]
[INFO] Configuring Jetty for project: Ambra Web Application
[INFO] Webapp source directory = /home/boconnor/Topaz/head/ambra/webapp/src/main/webapp
[INFO] Reload Mechanic: automatic
[INFO] web.xml file = /home/boconnor/Topaz/head/ambra/webapp/src/main/webapp/WEB-INF/web.xml
[INFO] Classes = /home/boconnor/Topaz/head/ambra/webapp/target/classes
[INFO] Context path = /ambra-webapp
[INFO] Tmp directory = determined at runtime
[INFO] Web defaults = org/mortbay/jetty/webapp/webdefault.xml
[INFO] Web overrides = none
[INFO] Webapp directory = /home/boconnor/Topaz/head/ambra/webapp/src/main/webapp
[INFO] Starting jetty 6.1.14 ...
2009-04-27 14:51:10.845::INFO: jetty-6.1.14
log4j:WARN Continuable parsing error 68 and column 10
log4j:WARN The content of element type "root" must match "(param*,(priority|level)?,appender-ref*)".
2009-04-27 14:51:11.327::INFO: No Transaction manager found - if your webapp requires one, please configure one.
2009-04-27 14:51:11.983:/ambra-webapp:INFO: Initializing Spring root WebApplicationContext
2009-04-27 14:51:11,983 INFO ContextLoader()> Root WebApplicationContext: initialization started
2009-04-27 14:51:12,008 INFO XmlWebApplicationContext()> Refreshing org.springframework.web.context.support.XmlWebApplicationContext@1020230: display name [Root WebApplicationContext]; startup date [Mon Apr 27 14:51:12 PDT 2009]; root of context hierarchy
2009-04-27 14:51:12,057 INFO XmlBeanDefinitionReader()> Loading XML bean definitions from ServletContext resource [/WEB-INF/propertyConfigurer.xml]
2009-04-27 14:51:12,295 INFO XmlBeanDefinitionReader()> Loading XML bean definitions from ServletContext resource [/WEB-INF/countryList.xml]
2009-04-27 14:51:12,356 INFO XmlBeanDefinitionReader()> Loading XML bean definitions from ServletContext resource [/WEB-INF/profaneWords.xml]
2009-04-27 14:51:12,395 INFO XmlBeanDefinitionReader()> Loading XML bean definitions from ServletContext resource [/WEB-INF/applicationContext.xml]
2009-04-27 14:51:12,499 INFO XmlWebApplicationContext()> Bean factory for application context [org.springframework.web.context.support.XmlWebApplicationContext@1020230]: org.springframework.beans.factory.support.DefaultListableBeanFactory@13c121b
2009-04-27 14:51:12,679 INFO EhCacheManagerFactoryBean()> Initializing EHCache CacheManager
2009-04-27 14:51:12,715 INFO RMICacheManagerPeerProviderFactory()> Starting manual peer provider with empty list of peers. No replication will occur unless peers are added.
2009-04-27 14:51:13,071 INFO XmlWebApplicationContext()> Bean 'org.springframework.aop.config.internalAutoProxyCreator' is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2009-04-27 14:51:13,080 INFO DefaultListableBeanFactory()> Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@13c121b: defining beans [propertyConfigurer,countries,profaneWords,pdpFactory,permissionsPdp,repliesPdp,annotationsPdp,articlesPdp,ratingsPdp,usersPdp,configurationStore,ambraConfiguration,fetchArticleService,trackBackService,articleXmlUtils,secondaryObjectService,xmlFactoryProperties,articleOtmService,feedService,adminService,crossRefPosterService,flagManagementService,documentManagementService,defaultEncodingCharset,applicationId,impliedPermissionsLoader,permissionsService,annotationConverter,replyService,annotationService,ratingsService,userService,profanityCheckingService,browseService,smallBlobService,otherConstants,searchService,journalCreator,journalService,bootstrapMigrator,fedoraBlobStore,simpleBlobStore,jtaTransactionManager,otmFactory,otmSessionFactory,scopedTarget.otmSession,otmSession,txManager,org.springframework.aop.config.internalAutoProxyCreator,org.springframework.transaction.interceptor.TransactionAttributeSourceAdvisor,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor,longTxTimeout,txCacheManager,objectCache,smallBlobCache,otmInterceptor,browseCache,userCache,feedCache,searchCache,articleAnnotationCache,journalCache,carrierCache,ambraFreemarkerManager,ambraFreemarkerConfig,cacheManager,journalEhcache,carrierEhcache,articleAnnotationEhcache,userEhcache,browseEhcache,feedEhcache,searchEhcache,objectEhcache,smallBlobEhcache,grantsEhcache,revokesEhcache,virtualJournalMappingFilterCache,mbeanServer,org.springframework.beans.factory.config.MethodInvokingFactoryBean,org.springframework.jmx.export.MBeanExporter,org.topazproject.ambra.logging:name=log4j,mailSender,freemarkerConfig,ambraMailer]; root of factory hierarchy
2009-04-27 14:51:13,622 INFO BitronixTransactionManager()> Bitronix Transaction Manager version 1.3
2009-04-27 14:51:13,625 INFO Configuration()> JVM unique ID: <topaz>
2009-04-27 14:51:13,635 INFO Recoverer()> recovery committed 0 dangling transaction(s) and rolled back 0 aborted transaction(s) on 0 resource(s) []
2009-04-27 14:51:13,644 INFO IncrementalRecoverer()> incremental recovery committed 0 dangling transaction(s) and rolled back 0 aborted transaction(s) on resource [OTM-Simple-Resource-Producer]
2009-04-27 14:51:13,928 INFO jotm()> JOTM started with a local transaction factory which is not bound.
2009-04-27 14:51:13,928 INFO jotm()> CAROL initialization
2009-04-27 14:51:13,935 INFO ConfigurationRepository()> No protocols were defined for property 'carol.protocols', trying with default protocol = 'jrmp'.
2009-04-27 14:51:13,969 INFO jta()> JOTM 2.0.10
2009-04-27 14:51:13,989 INFO Startup()> Host name aliases for this server are: [127.0.1.1, 127.0.0.1, localhost, Ubuntu-usws]
2009-04-27 14:51:14,018 INFO BlockFile$IOType()> Default IO Type: Explicit
2009-04-27 14:51:14,043 INFO AbstractBlockFile()> File size was not a multiple of blockSize: "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStringPool/xa.sp_avl".
2009-04-27 14:51:14,094 INFO AbstractBlockFile()> File size was not a multiple of blockSize: "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStatementStore/xa.g_0123".
2009-04-27 14:51:14,098 INFO AbstractBlockFile()> File size was not a multiple of blockSize: "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStatementStore/xa.g_1203".
2009-04-27 14:51:14,101 INFO AbstractBlockFile()> File size was not a multiple of blockSize: "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStatementStore/xa.g_2013".
2009-04-27 14:51:14,103 INFO AbstractBlockFile()> File size was not a multiple of blockSize: "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStatementStore/xa.g_3012".
2009-04-27 14:51:14,106 INFO AbstractBlockFile()> File size was not a multiple of blockSize: "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStatementStore/xa.g_3120".
2009-04-27 14:51:14,108 INFO AbstractBlockFile()> File size was not a multiple of blockSize: "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStatementStore/xa.g_3201".
2009-04-27 14:51:14,114 INFO XANodePoolImpl()> Node pool metaroot file for triple store "/home/boconnor/Topaz/var/ambra/mulgara_db/xaNodePool/xa" has invalid number of blocks: 21845
2009-04-27 14:51:14,115 INFO XAStringPoolImpl()> String pool metaroot file for triple store "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStringPool/xa" has invalid number of blocks: 1489
2009-04-27 14:51:14,117 INFO XAStatementStoreImpl()> Graph metaroot file for triple store "/home/boconnor/Topaz/var/ambra/mulgara_db/xaStatementStore/xa" has invalid number of blocks: 1927
2009-04-27 14:51:14,147 INFO ManagedBlockFile()> File /home/boconnor/Topaz/var/ambra/mulgara_db/xaStringPool/xa.sp_avl may not have been closed properly on shutdown.
nrBlocks=241821 nrValidBlocks=106760
STACK TRACE:
org.mulgara.store.xa.ManagedBlockFile$Phase.check(ManagedBlockFile.java:309)
org.mulgara.store.xa.ManagedBlockFile$Phase.<init>(ManagedBlockFile.java:264)
org.mulgara.store.xa.AVLFile$Phase.<init>(AVLFile.java:274)
org.mulgara.store.stringpool.xa.XAStringPoolImpl$Phase.<init>(XAStringPoolImpl.java:1330)
org.mulgara.store.stringpool.xa.XAStringPoolImpl.selectPhase(XAStringPoolImpl.java:818)
org.mulgara.resolver.StringPoolSessionFactory.selectPhase(StringPoolSessionFactory.java:333)
org.mulgara.resolver.Database.selectCommonPhase(Database.java:1215)
org.mulgara.resolver.Database.recoverDatabase(Database.java:1158)
org.mulgara.resolver.Database.<init>(Database.java:755)
org.mulgara.resolver.Database.<init>(Database.java:437)
org.mulgara.resolver.Database.<init>(Database.java:316)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:182)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:163)
org.topazproject.mulgara.itql.EmbeddedClient.getCon(EmbeddedClient.java:127)
org.topazproject.mulgara.itql.EmbeddedClient.<init>(EmbeddedClient.java:120)
org.topazproject.mulgara.itql.DefaultItqlClientFactory.createClient(DefaultItqlClientFactory.java:64)
org.topazproject.otm.stores.ItqlStore.getItqlClient(ItqlStore.java:916)
org.topazproject.otm.stores.ItqlStore.access$000(ItqlStore.java:80)
org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.<init>(ItqlStore.java:985)
org.topazproject.otm.stores.ItqlStore.openConnection(ItqlStore.java:143)
org.topazproject.otm.impl.AbstractSession.getTripleStoreCon(AbstractSession.java:401)
org.topazproject.otm.impl.SessionImpl.getTripleStoreCon(SessionImpl.java:67)
org.topazproject.otm.impl.AbstractSession.doNativeQuery(AbstractSession.java:262)
org.topazproject.otm.impl.SessionImpl.doNativeQuery(SessionImpl.java:67)
org.topazproject.ambra.migration.BootstrapMigrator.getGraphs(BootstrapMigrator.java:102)
org.topazproject.ambra.migration.BootstrapMigrator.migrate(BootstrapMigrator.java:72)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1240)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1205)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1171)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:425)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:216)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:782)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:709)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:384)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:287)
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352)
org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
org.mortbay.jetty.handler.ContextHandler.startContext(ContextHandler.java:548)
org.mortbay.jetty.servlet.Context.startContext(Context.java:136)
org.mortbay.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1234)
org.mortbay.jetty.handler.ContextHandler.doStart(ContextHandler.java:517)
org.mortbay.jetty.webapp.WebAppContext.doStart(WebAppContext.java:460)
org.mortbay.jetty.plugin.Jetty6PluginWebAppContext.doStart(Jetty6PluginWebAppContext.java:124)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152)
org.mortbay.jetty.handler.ContextHandlerCollection.doStart(ContextHandlerCollection.java:156)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerWrapper.doStart(HandlerWrapper.java:130)
org.mortbay.jetty.Server.doStart(Server.java:222)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.plugin.Jetty6PluginServer.start(Jetty6PluginServer.java:132)
org.mortbay.jetty.plugin.AbstractJettyMojo.startJetty(AbstractJettyMojo.java:379)
org.mortbay.jetty.plugin.AbstractJettyMojo.execute(AbstractJettyMojo.java:321)
org.mortbay.jetty.plugin.AbstractJettyRunMojo.execute(AbstractJettyRunMojo.java:205)
org.mortbay.jetty.plugin.Jetty6RunMojo.execute(Jetty6RunMojo.java:184)
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:447)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:539)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeStandaloneGoal(DefaultLifecycleExecutor.java:493)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:463)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:311)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:278)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:143)
org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:333)
org.apache.maven.DefaultMaven.execute(DefaultMaven.java:126)
org.apache.maven.cli.MavenCli.main(MavenCli.java:282)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
org.codehaus.classworlds.Launcher.main(Launcher.java:375)

2009-04-27 14:51:14,151 INFO ManagedBlockFile()> File /home/boconnor/Topaz/var/ambra/mulgara_db/xaStringPool/xa.sp_00 may not have been closed properly on shutdown.
nrBlocks=65536 nrValidBlocks=1109
STACK TRACE:
org.mulgara.store.xa.ManagedBlockFile$Phase.check(ManagedBlockFile.java:309)
org.mulgara.store.xa.ManagedBlockFile$Phase.<init>(ManagedBlockFile.java:264)
org.mulgara.store.stringpool.xa.XAStringPoolImpl$Phase.<init>(XAStringPoolImpl.java:1333)
org.mulgara.store.stringpool.xa.XAStringPoolImpl.selectPhase(XAStringPoolImpl.java:818)
org.mulgara.resolver.StringPoolSessionFactory.selectPhase(StringPoolSessionFactory.java:333)
org.mulgara.resolver.Database.selectCommonPhase(Database.java:1215)
org.mulgara.resolver.Database.recoverDatabase(Database.java:1158)
org.mulgara.resolver.Database.<init>(Database.java:755)
org.mulgara.resolver.Database.<init>(Database.java:437)
org.mulgara.resolver.Database.<init>(Database.java:316)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:182)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:163)
org.topazproject.mulgara.itql.EmbeddedClient.getCon(EmbeddedClient.java:127)
org.topazproject.mulgara.itql.EmbeddedClient.<init>(EmbeddedClient.java:120)
org.topazproject.mulgara.itql.DefaultItqlClientFactory.createClient(DefaultItqlClientFactory.java:64)
org.topazproject.otm.stores.ItqlStore.getItqlClient(ItqlStore.java:916)
org.topazproject.otm.stores.ItqlStore.access$000(ItqlStore.java:80)
org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.<init>(ItqlStore.java:985)
org.topazproject.otm.stores.ItqlStore.openConnection(ItqlStore.java:143)
org.topazproject.otm.impl.AbstractSession.getTripleStoreCon(AbstractSession.java:401)
org.topazproject.otm.impl.SessionImpl.getTripleStoreCon(SessionImpl.java:67)
org.topazproject.otm.impl.AbstractSession.doNativeQuery(AbstractSession.java:262)
org.topazproject.otm.impl.SessionImpl.doNativeQuery(SessionImpl.java:67)
org.topazproject.ambra.migration.BootstrapMigrator.getGraphs(BootstrapMigrator.java:102)
org.topazproject.ambra.migration.BootstrapMigrator.migrate(BootstrapMigrator.java:72)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1240)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1205)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1171)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:425)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:216)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:782)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:709)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:384)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:287)
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352)
org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
org.mortbay.jetty.handler.ContextHandler.startContext(ContextHandler.java:548)
org.mortbay.jetty.servlet.Context.startContext(Context.java:136)
org.mortbay.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1234)
org.mortbay.jetty.handler.ContextHandler.doStart(ContextHandler.java:517)
org.mortbay.jetty.webapp.WebAppContext.doStart(WebAppContext.java:460)
org.mortbay.jetty.plugin.Jetty6PluginWebAppContext.doStart(Jetty6PluginWebAppContext.java:124)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152)
org.mortbay.jetty.handler.ContextHandlerCollection.doStart(ContextHandlerCollection.java:156)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerWrapper.doStart(HandlerWrapper.java:130)
org.mortbay.jetty.Server.doStart(Server.java:222)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.plugin.Jetty6PluginServer.start(Jetty6PluginServer.java:132)
org.mortbay.jetty.plugin.AbstractJettyMojo.startJetty(AbstractJettyMojo.java:379)
org.mortbay.jetty.plugin.AbstractJettyMojo.execute(AbstractJettyMojo.java:321)
org.mortbay.jetty.plugin.AbstractJettyRunMojo.execute(AbstractJettyRunMojo.java:205)
org.mortbay.jetty.plugin.Jetty6RunMojo.execute(Jetty6RunMojo.java:184)
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:447)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:539)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeStandaloneGoal(DefaultLifecycleExecutor.java:493)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:463)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:311)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:278)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:143)
org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:333)
org.apache.maven.DefaultMaven.execute(DefaultMaven.java:126)
org.apache.maven.cli.MavenCli.main(MavenCli.java:282)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
org.codehaus.classworlds.Launcher.main(Launcher.java:375)

2009-04-27 14:51:14,159 INFO ManagedBlockFile()> File /home/boconnor/Topaz/var/ambra/mulgara_db/xaStringPool/xa.sp_01 may not have been closed properly on shutdown.
nrBlocks=32768 nrValidBlocks=2203
STACK TRACE:
org.mulgara.store.xa.ManagedBlockFile$Phase.check(ManagedBlockFile.java:309)
org.mulgara.store.xa.ManagedBlockFile$Phase.<init>(ManagedBlockFile.java:264)
org.mulgara.store.stringpool.xa.XAStringPoolImpl$Phase.<init>(XAStringPoolImpl.java:1333)
org.mulgara.store.stringpool.xa.XAStringPoolImpl.selectPhase(XAStringPoolImpl.java:818)
org.mulgara.resolver.StringPoolSessionFactory.selectPhase(StringPoolSessionFactory.java:333)
org.mulgara.resolver.Database.selectCommonPhase(Database.java:1215)
org.mulgara.resolver.Database.recoverDatabase(Database.java:1158)
org.mulgara.resolver.Database.<init>(Database.java:755)
org.mulgara.resolver.Database.<init>(Database.java:437)
org.mulgara.resolver.Database.<init>(Database.java:316)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:182)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:163)
org.topazproject.mulgara.itql.EmbeddedClient.getCon(EmbeddedClient.java:127)
org.topazproject.mulgara.itql.EmbeddedClient.<init>(EmbeddedClient.java:120)
org.topazproject.mulgara.itql.DefaultItqlClientFactory.createClient(DefaultItqlClientFactory.java:64)
org.topazproject.otm.stores.ItqlStore.getItqlClient(ItqlStore.java:916)
org.topazproject.otm.stores.ItqlStore.access$000(ItqlStore.java:80)
org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.<init>(ItqlStore.java:985)
org.topazproject.otm.stores.ItqlStore.openConnection(ItqlStore.java:143)
org.topazproject.otm.impl.AbstractSession.getTripleStoreCon(AbstractSession.java:401)
org.topazproject.otm.impl.SessionImpl.getTripleStoreCon(SessionImpl.java:67)
org.topazproject.otm.impl.AbstractSession.doNativeQuery(AbstractSession.java:262)
org.topazproject.otm.impl.SessionImpl.doNativeQuery(SessionImpl.java:67)
org.topazproject.ambra.migration.BootstrapMigrator.getGraphs(BootstrapMigrator.java:102)
org.topazproject.ambra.migration.BootstrapMigrator.migrate(BootstrapMigrator.java:72)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1240)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1205)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1171)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:425)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:216)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:782)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:709)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:384)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:287)
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352)
org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
org.mortbay.jetty.handler.ContextHandler.startContext(ContextHandler.java:548)
org.mortbay.jetty.servlet.Context.startContext(Context.java:136)
org.mortbay.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1234)
org.mortbay.jetty.handler.ContextHandler.doStart(ContextHandler.java:517)
org.mortbay.jetty.webapp.WebAppContext.doStart(WebAppContext.java:460)
org.mortbay.jetty.plugin.Jetty6PluginWebAppContext.doStart(Jetty6PluginWebAppContext.java:124)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152)
org.mortbay.jetty.handler.ContextHandlerCollection.doStart(ContextHandlerCollection.java:156)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerWrapper.doStart(HandlerWrapper.java:130)
org.mortbay.jetty.Server.doStart(Server.java:222)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.plugin.Jetty6PluginServer.start(Jetty6PluginServer.java:132)
org.mortbay.jetty.plugin.AbstractJettyMojo.startJetty(AbstractJettyMojo.java:379)
org.mortbay.jetty.plugin.AbstractJettyMojo.execute(AbstractJettyMojo.java:321)
org.mortbay.jetty.plugin.AbstractJettyRunMojo.execute(AbstractJettyRunMojo.java:205)
org.mortbay.jetty.plugin.Jetty6RunMojo.execute(Jetty6RunMojo.java:184)
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:447)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:539)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeStandaloneGoal(DefaultLifecycleExecutor.java:493)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:463)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:311)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:278)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:143)
org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:333)
org.apache.maven.DefaultMaven.execute(DefaultMaven.java:126)
org.apache.maven.cli.MavenCli.main(MavenCli.java:282)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
org.codehaus.classworlds.Launcher.main(Launcher.java:375)

2009-04-27 14:51:14,167 INFO ManagedBlockFile()> File /home/boconnor/Topaz/var/ambra/mulgara_db/xaStringPool/xa.sp_02 may not have been closed properly on shutdown.
nrBlocks=16384 nrValidBlocks=3235
STACK TRACE:
org.mulgara.store.xa.ManagedBlockFile$Phase.check(ManagedBlockFile.java:309)
org.mulgara.store.xa.ManagedBlockFile$Phase.<init>(ManagedBlockFile.java:264)
org.mulgara.store.stringpool.xa.XAStringPoolImpl$Phase.<init>(XAStringPoolImpl.java:1333)
org.mulgara.store.stringpool.xa.XAStringPoolImpl.selectPhase(XAStringPoolImpl.java:818)
org.mulgara.resolver.StringPoolSessionFactory.selectPhase(StringPoolSessionFactory.java:333)
org.mulgara.resolver.Database.selectCommonPhase(Database.java:1215)
org.mulgara.resolver.Database.recoverDatabase(Database.java:1158)
org.mulgara.resolver.Database.<init>(Database.java:755)
org.mulgara.resolver.Database.<init>(Database.java:437)
org.mulgara.resolver.Database.<init>(Database.java:316)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:182)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:163)
org.topazproject.mulgara.itql.EmbeddedClient.getCon(EmbeddedClient.java:127)
org.topazproject.mulgara.itql.EmbeddedClient.<init>(EmbeddedClient.java:120)
org.topazproject.mulgara.itql.DefaultItqlClientFactory.createClient(DefaultItqlClientFactory.java:64)
org.topazproject.otm.stores.ItqlStore.getItqlClient(ItqlStore.java:916)
org.topazproject.otm.stores.ItqlStore.access$000(ItqlStore.java:80)
org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.<init>(ItqlStore.java:985)
org.topazproject.otm.stores.ItqlStore.openConnection(ItqlStore.java:143)
org.topazproject.otm.impl.AbstractSession.getTripleStoreCon(AbstractSession.java:401)
org.topazproject.otm.impl.SessionImpl.getTripleStoreCon(SessionImpl.java:67)
org.topazproject.otm.impl.AbstractSession.doNativeQuery(AbstractSession.java:262)
org.topazproject.otm.impl.SessionImpl.doNativeQuery(SessionImpl.java:67)
org.topazproject.ambra.migration.BootstrapMigrator.getGraphs(BootstrapMigrator.java:102)
org.topazproject.ambra.migration.BootstrapMigrator.migrate(BootstrapMigrator.java:72)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1240)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1205)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1171)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:425)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:216)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:782)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:709)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:384)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:287)
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352)
org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
org.mortbay.jetty.handler.ContextHandler.startContext(ContextHandler.java:548)
org.mortbay.jetty.servlet.Context.startContext(Context.java:136)
org.mortbay.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1234)
org.mortbay.jetty.handler.ContextHandler.doStart(ContextHandler.java:517)
org.mortbay.jetty.webapp.WebAppContext.doStart(WebAppContext.java:460)
org.mortbay.jetty.plugin.Jetty6PluginWebAppContext.doStart(Jetty6PluginWebAppContext.java:124)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152)
org.mortbay.jetty.handler.ContextHandlerCollection.doStart(ContextHandlerCollection.java:156)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerCollection.doStart(HandlerCollection.java:152)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.handler.HandlerWrapper.doStart(HandlerWrapper.java:130)
org.mortbay.jetty.Server.doStart(Server.java:222)
org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
org.mortbay.jetty.plugin.Jetty6PluginServer.start(Jetty6PluginServer.java:132)
org.mortbay.jetty.plugin.AbstractJettyMojo.startJetty(AbstractJettyMojo.java:379)
org.mortbay.jetty.plugin.AbstractJettyMojo.execute(AbstractJettyMojo.java:321)
org.mortbay.jetty.plugin.AbstractJettyRunMojo.execute(AbstractJettyRunMojo.java:205)
org.mortbay.jetty.plugin.Jetty6RunMojo.execute(Jetty6RunMojo.java:184)
org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:447)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:539)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeStandaloneGoal(DefaultLifecycleExecutor.java:493)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:463)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:311)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:278)
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:143)
org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:333)
org.apache.maven.DefaultMaven.execute(DefaultMaven.java:126)
org.apache.maven.cli.MavenCli.main(MavenCli.java:282)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
org.codehaus.classworlds.Launcher.main(Launcher.java:375)

2009-04-27 14:51:14,175 INFO ManagedBlockFile()> File /home/boconnor/Topaz/var/ambra/mulgara_db/xaStringPool/xa.sp_03 may not have been closed properly on shutdown.
nrBlocks=8192 nrValidBlocks=2116
STACK TRACE:
org.mulgara.store.xa.ManagedBlockFile$Phase.check(ManagedBlockFile.java:309)
org.mulgara.store.xa.ManagedBlockFile$Phase.<init>(ManagedBlockFile.java:264)
org.mulgara.store.stringpool.xa.XAStringPoolImpl$Phase.<init>(XAStringPoolImpl.java:1333)
org.mulgara.store.stringpool.xa.XAStringPoolImpl.selectPhase(XAStringPoolImpl.java:818)
org.mulgara.resolver.StringPoolSessionFactory.selectPhase(StringPoolSessionFactory.java:333)
org.mulgara.resolver.Database.selectCommonPhase(Database.java:1215)
org.mulgara.resolver.Database.recoverDatabase(Database.java:1158)
org.mulgara.resolver.Database.<init>(Database.java:755)
org.mulgara.resolver.Database.<init>(Database.java:437)
org.mulgara.resolver.Database.<init>(Database.java:316)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:182)
org.topazproject.mulgara.itql.EmbeddedClient.newSessionFactory(EmbeddedClient.java:163)
org.topazproject.mulgara.itql.EmbeddedClient.getCon(EmbeddedClient.java:127)
org.topazproject.mulgara.itql.EmbeddedClient.<init>(EmbeddedClient.java:120)
org.topazproject.mulgara.itql.DefaultItqlClientFactory.createClient(DefaultItqlClientFactory.java:64)
org.topazproject.otm.stores.ItqlStore.getItqlClient(ItqlStore.java:916)
org.topazproject.otm.stores.ItqlStore.access$000(ItqlStore.java:80)
org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.<init>(ItqlStore.java:985)
org.topazproject.otm.stores.ItqlStore.openConnection(ItqlStore.java:143)
org.topazproject.otm.impl.AbstractSession.getTripleStoreCon(AbstractSession.java:401)
org.topazproject.otm.impl.SessionImpl.getTripleStoreCon(SessionImpl.java:67)
org.topazproject.otm.impl.AbstractSession.doNativeQuery(AbstractSession.java:262)
org.topazproject.otm.impl.SessionImpl.doNativeQuery(SessionImpl.java:67)
org.topazproject.ambra.migration.BootstrapMigrator.getGraphs(BootstrapMigrator.java:102)
org.topazproject.ambra.migration.BootstrapMigrator.migrate(BootstrapMigrator.java:72)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
java.lang.reflect.Method.invoke(Method.java:597)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1240)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1205)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1171)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:425)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:216)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:782)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:709)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:384)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:337)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:880)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:828)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:421)
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:251)
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:156)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:248)
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160)
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:287)
org.springframewo